with_OMAT_gene
0.65448099999999997944
<html><body><title>AT1G11700.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121170001000i/AT1G11700.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121170001000i/AT1G11700.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121170001000i/AT1G11700.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126639001000i">AT1G66390.1</a></td><td>0.928993</td><td>MYB90 (MYB DOMAIN PROTEIN 90)</td><td>OMAT1P018490</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126860001000i">AT1G68600.1</a></td><td>0.917508</td><td>unknown protein</td><td>OMAT1P019390</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126418001000i">AT1G64180.1</a></td><td>0.914179</td><td>intracellular protein transport protein USO1-related</td><td>OMAT1P017620</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520364001000i">AT5G03640.1</a></td><td>0.908965</td><td>protein kinase family protein</td><td>OMAT5P001080</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524543001000i">AT5G45430.1</a></td><td>0.90693</td><td>protein kinase, putative</td><td>OMAT5P012700,OMAT5P012705</td><td>[OMAT5P012700]-, [OMAT5P012705]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524542801000i">AT5G45428.1</a></td><td>0.90693</td><td>CPuORF24 (Conserved peptide upstream open reading frame 24)</td><td>OMAT5P012700,OMAT5P012705</td><td>[OMAT5P012700]-, [OMAT5P012705]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523871001000i">AT5G38710.1</a></td><td>0.899861</td><td>proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative</td><td>OMAT5P010340</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523601001000i">AT5G36010.1</a></td><td>0.89438</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524877501000i">AT5G48775.1</a></td><td>0.890815</td><td>other RNA</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522315001000i">AT5G23150.1</a></td><td>0.887881</td><td>HUA2 (ENHANCER OF AG-4 2)</td><td>OMAT5P007830</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320208001000i">AT3G02080.1</a></td><td>-0.736946</td><td>40S ribosomal protein S19 (RPS19A)</td><td>OMAT3P100490</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320933001000i">AT3G09330.1</a></td><td>-0.734133</td><td>amino acid transporter family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420900002000i">AT4G09000.2</a></td><td>-0.720761</td><td>14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)</td><td>OMAT4P002200</td><td>-</td><td>OMAT4P101760</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525702001000i">AT5G57020.1</a></td><td>-0.714693</td><td>NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)</td><td>OMAT5P016980</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325544001000i">AT3G55440.1</a></td><td>-0.708949</td><td>TPI (TRIOSEPHOSPHATE ISOMERASE)</td><td>OMAT3P015290</td><td>-</td><td>OMAT3P113470</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224163001000i">AT2G41630.1</a></td><td>-0.705945</td><td>TFIIB (TRANSCRIPTION FACTOR II B)</td><td>OMAT2P110510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421418001000i">AT4G14180.1</a></td><td>-0.705029</td><td>AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423462001000i">AT4G34620.1</a></td><td>-0.691715</td><td>SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)</td><td>OMAT4P110110</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321323501000i">AT3G13235.1</a></td><td>-0.685019</td><td>ubiquitin family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120441001000i">AT1G04410.1</a></td><td>-0.675808</td><td>malate dehydrogenase, cytosolic, putative</td><td>OMAT1P101080</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121170001000i/AT1G11700.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>12/200</td><td>2.76</td><td>4.70e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>64/200</td><td>1.29</td><td>8.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>22/200</td><td>1.92</td><td>1.22e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>24/200</td><td>1.83</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>32/200</td><td>1.56</td><td>4.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>30/200</td><td>1.55</td><td>5.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>14/200</td><td>1.92</td><td>6.85e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT1G11700.1